{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "import astar.data as ad\n",
    "import astar.visual as vis\n",
    "import numpy as np"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Here we read data from the run directory"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "meshdir  = \"/home/mvaisala/astaroth/build/\""
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "#imesh = 30000\n",
    "imesh = 0\n",
    "mesh = ad.read.Mesh(imesh, fdir=meshdir)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Auxuliary variables"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "uu_tot = np.sqrt(mesh.uu[0]**2.0 + mesh.uu[1]**2.0 + mesh.uu[2]**2.0)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Example visualization funtion call. "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {
    "scrolled": true
   },
   "outputs": [],
   "source": [
    "vis.slices.plot_3(mesh, uu_tot, title = r'$\\|u\\|$')\n",
    "vis.slices.plot_3(mesh, mesh.uu[0], title = r'$u_x$')\n",
    "vis.slices.plot_3(mesh, mesh.uu[1], title = r'$u_y$')\n",
    "vis.slices.plot_3(mesh, mesh.uu[2], title = r'$u_z$')\n",
    "vis.slices.plot_3(mesh, mesh.lnrho, title = r'$\\ln_\\rho$')#, colrange=[0,0.1])\n",
    "vis.slices.plot_3(mesh, np.exp(mesh.lnrho), title = r'$\\rho$')\n",
    "vis.slices.plot_3(mesh, np.exp(mesh.lnrho), title = r'$N_\\mathrm{col}$', slicetype = 'sum')#, colrange=[130,139])\n",
    "vis.slices.plot_3(mesh, uu_tot, title = r'$\\Sigma \\|u\\|$', slicetype = 'sum')#, colrange=[130,139])\n",
    "#vis.slices.plot_3(mesh, mesh.ss, title = r'$s$')\n",
    "vis.slices.plot_3(mesh, mesh.accretion, title = r'$Accretion buffer$')\n"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Ploting time series"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "ts = ad.read.TimeSeries(fdir=meshdir)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": [
    "vis.lineplot.plot_ts(ts, lnrho=True, acc=True, uux=True)\n",
    "\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
 ],
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