Initial ShareLaTeX Import

This commit is contained in:
Carl Pearson
2017-05-04 14:03:15 -05:00
commit 473f335540
9 changed files with 15215 additions and 0 deletions

4580
IEEEtran.cls Normal file

File diff suppressed because it is too large Load Diff

BIN
cem17_template.pdf Normal file

Binary file not shown.

232
cem17_template.tex Normal file
View File

@@ -0,0 +1,232 @@
% IEEE Paper Template for A4 Page Size (V1)
% Sample Conference Paper using IEEE LaTeX style file for A4 pagesize.
% Copyright (C) 2006 Causal Productions Pty Ltd.
% Permission is granted to distribute and revise this file provided that
% this header remains intact.
%
%
% This style file is produced for CEM'17 Computational Electromagnetics Workshop
% Modified from a file indicated above.
\documentclass[10pt,conference,a4paper]{IEEEtran}
\usepackage{times,amsmath,epsfig}
\title{Solving Problems Involving Inhomogeneous Media with MLFMA on GPU Clusters}
\author{
{Carl Pearson{\small $^{1}$}, Mert Hidayetoglu{\small $^{1}$}, and
Wen-Mei Hwu{\small $^{1}$} }
\vspace{1.6mm}\\
\fontsize{10}{10}\selectfont\itshape
$~^{1}$University of Illinois Urbana-Champaign Electrical and Computer Engineering, Urbana, 61801, USA\\
$~^{2}$Second Affiliation, City, Postal Code, Country\\
\fontsize{9}{9}\upshape \texttt{\{pearson, hidayet2, w-hwu\}}@illinois.edu}
\begin{document}
\maketitle
\begin{abstract}
The multilevel fast multiple method (MLFMM) is a key tool for efficiently solving large scattering problems.
Highly inhomogeneous media prevents converting the problem into a surface-scattering problem via equivalence principle, and therefore we solve the corresponding volume integral equation.
We evaluate an efficient implementation of MLFMM for such two-dimensional volumetric scattering problems on high-performance GPU-accelerated supercomputing nodes.
This class of problems are commonly encountered in imaging and inverse-scattering applications.
\end{abstract}
\section{Introduction}
In order to achieve an efficient implementation on multiple graphics processing units (GPUs), we formulate the MLFMM operations as matrix-matrix multiplications, where the large matrices are partitioned among message passing interface (MPI) processes. Each process employs a single GPU for performing the corresponding partial multiplications. The implementation can employ up to 16 GPUs. During the MLFMM multiplications, the GPUs communicate through MPI to receive the required data from each other. These communications are costly since they involve moving the data from GPUs to central processing units (CPUs), CPUs to CPUs (as in the traditional CPU implementation), and then from CPUs to GPUs. To minimize this cost, we optimize the data amount to be transferred, and merge small MPI buffers into large ones. Furthermore, we overlap the communications with the GPU computations by a reordering of the MLFMM operations. This strategy completely hides the communication overhead and provides good, i.e., 94\%, MPI parallelization efficiency.
\section{Inverse-Scattering Formulation and Application Architecture}
\label{sec:application}
Table \ref{tab:components} shows the breakdown of application component execution times on the Blue Waters supercomputer.
\begin{table}{}
\centering \caption{Breakdown of Application Component Time} \label{tab:components}
\begin{tabular}{|c|c|}
\hline \textbf{Component} & \textbf{Wall Time (s)} \\
\hline
\hline Preprocessing & 0 \\
\hline Setup & 0 \\
\hline Solution & 0 \\
\hline Matvec & 0 \\
\hline Solver & 0 \\
\hline Postprocessing & 0 \\
\hline Other & 0 \\
\hline Total & 0 \\
\hline
\end{tabular}
\end{table}
\section{MLFMM Results}
As described in section \ref{sec:application} and shown in Table \ref{tab:components}, the MLFMM realization of matrix-vector multiplications forms the core computational kernel of the application, and its performance dominates that of the full inverse solver. This section presents an analysis of the performance of the MLFMM algorithm on three different systems.
\subsection{Evaluation Systems}
\begin{table}{}
\centering \caption{Evaluation Systems} \label{tab:systems}
\begin{tabular}{|c|c|c|c|}
\hline & \textbf{Blue Waters XK Node} & \textbf{Blue Waters XE Node} & \textbf{Minsky} \\
\hline
\hline \textbf{CPU 1} & AMD Opteron 6276 & AMD Opteron 6276 & IBM Power8 \\
\hline \textbf{CPU 2} & -- & AMD Opteron 6276 & IBM Power8 \\
\hline
\hline \textbf{GPU 1} & K20X (6 GB RAM & -- & P100 (16GB RAM) \\
\hline \textbf{GPU 2} & -- & -- & P100 (16GB RAM) \\
\hline \textbf{GPU 3} & -- & -- & P100 (16GB RAM) \\
\hline \textbf{GPU 4} & -- & -- & P100 (16GB RAM) \\
\hline \textbf{RAM} & 32GB & 64 GB & 512 GB \\
\hline \textbf{CPU-GPU Connection} & PCIe & -- & NVLink \\
\hline
\end{tabular}
\end{table}
The Blue Waters XE Node and Blue Waters XK node are two different kinds of computing nodes available on the Blue Waters supercomputer.
Both nodes are two socket-systems: the XE node has two AMD Opteron 6276 CPUs, each which has 8 floating-point units and hardware support for 16 executing threads. The XK node replaces one of these CPUs with an NVIDIA K20X GPUs based off of the Kepler architecture with 6GB of RAM.
These systems are representative of the nodes in current-generation clusters and supercomputers.
The Minsky system represents a next-generation accelerator-heavy supercomputing node.
It has two IBM Power8 CPUs with 10 floating-point units and 80 executing threads.
In addition, each Minsky machine has four NVIDIA P100 GPUs based off of the Pascal architecture with 16GB of RAM.
\subsection{MLFMM Performance}
\subsection{GPU Kernel Performance}
\begin{table}{}
\centering \caption{Evaluation Systems} \label{tab:systems}
\begin{tabular}{|c|c|c|}
\hline \textbf{Kernel} & \textbf{XK} & \textbf{Minsky} \\
\hline
\hline \textbf{CPU 1} & AMD Opteron 6276 & AMD Opteron 6276 \\
\hline \textbf{CPU 2} & -- & AMD Opteron 6276 \\
\hline
\hline \textbf{GPU 1} & K20X (6 GB RAM & -- \\
\hline \textbf{GPU 2} & -- & -- \\
\hline \textbf{GPU 3} & -- & -- \\
\hline \textbf{GPU 4} & -- & -- \\
\hline \textbf{RAM} & 32GB & 64 GB \\
\hline \textbf{CPU-GPU Connection} & PCIe & \\
\hline
\end{tabular}
\end{table}
This document is a template for authors preparing papers for the
CEM'17 Computing and Electromagnetics Workshop in Barcelona, Spain.
The papers are required to use the IEEE style by following the
instructions provided in this document. The language is English.
The papers are expected to be two-pages long.
\begin{figure}[b]
\begin{center}
\begin{tabular}{c}
\mbox{\psfig{figure=example_fig0.pdf,width=8cm}}
\end{tabular}
\end{center}
\caption{A three-dimensional plot with gray-scale
format.}\label{fig1}
\end{figure}
\section{Text Format} Page size is A4, which is 210 mm (8.27 in) wide and 297 mm
(11.69 in) long. The margins are as follows:
\begin{itemize}
\item Top: 19 mm (0.75 in) \item Bottom: 43 mm (1.69 in) \item
Left-Right: 14.32 mm (0.56 in)
\end{itemize}
The paper is in two column format with a space of 4.22 mm (0.17 in)
between columns. All title and author details must be in
single-column format and must be centered. All paragraphs are
indented. The entire document should be in Times New Roman or
Times font. Recommended font size is 10~pt for the main text.
Headings of the subsections are as follows, if required:
\subsection{This is First-Level Subsection}
You may use 1st level subsections, if required.
\\
\subsubsection{This is Second-Level Subsection}
You may use 2nd level subsections, if required.
\\
\\
\indent Page numbers, headers and footers should not be used. All
hypertext links and bookmarks should be removed from papers. If
you need to refer to an Internet email address or URL in your
paper, you should type out the address or URL fully in regular
font.
\begin{figure}[t]
\begin{center}
\begin{tabular}{c}
\mbox{\psfig{figure=example_fig1.pdf,width=8cm}}\\
{(a)}\\\\ \mbox{\psfig{figure=example_fig2.pdf,width=8cm}}\\{(b)}
\end{tabular}
\end{center}
\caption{Three-dimensional plots with colors. Using (a)
inappropriate and (b) appropriate colors for gray-scale
prints.}\label{fig2}
\end{figure}
\section{Figures and Tables}
Figures should be centered in the column, but large figures may
span across both columns, if they are positioned either at the top
or at the bottom of the page. Graphics should have an adequate
resolution. Fig.~\ref{fig1} presents an example plot in gray-scale
format. Colors can be used; however, it is recommended that the
graphics are checked to reproduce the required details in
gray-scale copy. For example, the colors in Fig.~\ref{fig2}(a) are
not appropriate for a gray-scale print. For the same plot,
Fig.~\ref{fig2}(b) is more preferable. Figures are numbered using
Arabic numerals and the captions are in 8~pt regular font. Tables
should be numbered using uppercase Roman numerals and their
captions are centered as in Table~\ref{table1}.
\begin{table}{}
\centering \caption{Caption of the Table.} \label{table1}
\begin{tabular}{|c|c|c|c|}
\hline Item~1& Item~2
& Item~3 & Item~4\\
\hline\hline \multicolumn{4}{|c|}{Item~5} \\
\hline Item~6&
\multicolumn{3}{|c|}{Item~7}\\
\hline Item~8 & Item~9 & Item~10 & Item~11\\
\hline
\end{tabular}
\end{table}
\section{References} The heading of the references section is
not be numbered and all reference items are in 8~pt font.
References are required to be in IEEE style. Please refer to the
examples for journals~\cite{journal}, for
books~\cite{book1},~\cite{book2}, and for conference
papers~\cite{conf1},~\cite{conf2}.
% the following vfill coursely balances the columns on the last page
\vfill \pagebreak
\section{Conclusions}
This template uses IEEE style and provides necessary information
to prepare papers for CEM'17 Workshop. Thank you for your
contributions.
\section*{Acknowledgment}
Acknowledgments should be here.
\bibliographystyle{IEEEtran}
\begin{thebibliography}{99}
\bibitem{journal} A.~Author, B.~Author, and C.~Author,
``Publication title,'' {\it Journal Title}, vol.~0, no.~0,
pp.~00--00, Month~Year.
\bibitem{book1} A.~Author, B.~Author, and C.~Author,
{\it Book Title}. Location: Publisher,~Year.
\bibitem{book2} A.~Author, B.~Author, and C.~Author,
``Chapter title,'' in {\it Book Title}, A.~Editor,~Ed. Location:
Publisher,~Year,~Chap.~0.
\bibitem{conf1} A.~Author, B.~Author, and C.~Author, ``Paper
title,'' in {\it Proc. Conference Title}, vol.~0, Year, pp.~0--0.
\bibitem{conf2} A.~Author, B.~Author, and C.~Author, ``Paper
title,'' {\it Conference Title}, Location, Country, Month~Year.
\end{thebibliography}
\end{document}

3432
example_fig0.eps Normal file

File diff suppressed because it is too large Load Diff

BIN
example_fig0.pdf Normal file

Binary file not shown.

3486
example_fig1.eps Normal file

File diff suppressed because it is too large Load Diff

BIN
example_fig1.pdf Normal file

Binary file not shown.

3485
example_fig2.eps Normal file

File diff suppressed because it is too large Load Diff

BIN
example_fig2.pdf Normal file

Binary file not shown.