cwpearson/suitesparse-downloader
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

don't use poetry, update Perlmutter environment

Browse Source
This commit is contained in:
Carl Pearson
2023-03-09 10:24:58 -08:00
parent 07035904ee
commit 80d18fca11
6 changed files with 23 additions and 242 deletions
Download Patch File Download Diff File Expand all files Collapse all files

11
Pipfile Normal file
View File

@@ -0,0 +1,11 @@
[[source]]
url = "https://pypi.org/simple"
verify_ssl = true
name = "pypi"
[packages]
[dev-packages]
[requires]
python_version = "3.9"

11
README.md
View File

@@ -1,22 +1,21 @@
# ss-downloader # ss-downloader
Install poetry & Python 3.8+
``` ```
curl -sSL https://raw.githubusercontent.com/python-poetry/poetry/master/get-poetry.py | python - pipenv shell
pip install -r requirements.txt
``` ```
## how to use ## how to use
``` ```
source load-env.sh source load-env.sh
poetry run python list.py python list.py
poetry run python download.py <dataset name> python download.py <dataset name>
``` ```
To download all datasets To download all datasets
``` ```
poetry run python download.py all python download.py all
``` ```
You can move the datasets due to relative symlinks. For example: You can move the datasets due to relative symlinks. For example:

7
load-env.sh
View File

@@ -2,6 +2,8 @@
host=`hostname` host=`hostname`
if [[ "$NERSC_HOST" == cori ]]; then if [[ "$NERSC_HOST" == cori ]]; then
echo \$NERSC_HOST matched cori echo \$NERSC_HOST matched cori
@@ -13,8 +15,9 @@ if [[ "$NERSC_HOST" == cori ]]; then
elif [[ "$NERSC_HOST" == perlmutter ]]; then elif [[ "$NERSC_HOST" == perlmutter ]]; then
echo \$NERSC_HOST matched perlmutter echo \$NERSC_HOST matched perlmutter
module load cray-python/3.9.4.1 echo module load cray-python/3.9.13.1
which python module load cray-python/3.9.13.1
export SS_DIR="$CFS"/m3918/pearson export SS_DIR="$CFS"/m3918/pearson
echo "\$SS_DIR = $SS_DIR" echo "\$SS_DIR = $SS_DIR"
elif [[ `hostname` =~ ascicgpu030 ]]; then elif [[ `hostname` =~ ascicgpu030 ]]; then

218
poetry.lock generated
View File

@@ -1,218 +0,0 @@
[[package]]
name = "certifi"
version = "2021.10.8"
description = "Python package for providing Mozilla's CA Bundle."
category = "main"
optional = false
python-versions = "*"
[[package]]
name = "charset-normalizer"
version = "2.0.7"
description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
category = "main"
optional = false
python-versions = ">=3.5.0"
[package.extras]
unicode_backport = ["unicodedata2"]
[[package]]
name = "colorama"
version = "0.4.4"
description = "Cross-platform colored terminal text."
category = "main"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
[[package]]
name = "idna"
version = "3.3"
description = "Internationalized Domain Names in Applications (IDNA)"
category = "main"
optional = false
python-versions = ">=3.5"
[[package]]
name = "numpy"
version = "1.21.4"
description = "NumPy is the fundamental package for array computing with Python."
category = "main"
optional = false
python-versions = ">=3.7,<3.11"
[[package]]
name = "requests"
version = "2.26.0"
description = "Python HTTP for Humans."
category = "main"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*"
[package.dependencies]
certifi = ">=2017.4.17"
charset-normalizer = {version = ">=2.0.0,<2.1.0", markers = "python_version >= \"3\""}
idna = {version = ">=2.5,<4", markers = "python_version >= \"3\""}
urllib3 = ">=1.21.1,<1.27"
[package.extras]
socks = ["PySocks (>=1.5.6,!=1.5.7)", "win-inet-pton"]
use_chardet_on_py3 = ["chardet (>=3.0.2,<5)"]
[[package]]
name = "scipy"
version = "1.7.3"
description = "SciPy: Scientific Library for Python"
category = "main"
optional = false
python-versions = ">=3.7,<3.11"
[package.dependencies]
numpy = ">=1.16.5,<1.23.0"
[[package]]
name = "ssgetpy"
version = "1.0-pre2"
description = ""
category = "main"
optional = false
python-versions = ">3.5.2"
develop = false
[package.dependencies]
requests = ">=2.22"
tqdm = ">=4.41"
[package.source]
type = "git"
url = "https://github.com/cwpearson/ssgetpy.git"
reference = "be00d2a"
resolved_reference = "be00d2ad64c55d32291ba820f3d040524b1c5b0e"
[[package]]
name = "tqdm"
version = "4.62.3"
description = "Fast, Extensible Progress Meter"
category = "main"
optional = false
python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7"
[package.dependencies]
colorama = {version = "*", markers = "platform_system == \"Windows\""}
[package.extras]
dev = ["py-make (>=0.1.0)", "twine", "wheel"]
notebook = ["ipywidgets (>=6)"]
telegram = ["requests"]
[[package]]
name = "urllib3"
version = "1.26.7"
description = "HTTP library with thread-safe connection pooling, file post, and more."
category = "main"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4"
[package.extras]
brotli = ["brotlipy (>=0.6.0)"]
secure = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "certifi", "ipaddress"]
socks = ["PySocks (>=1.5.6,!=1.5.7,<2.0)"]
[metadata]
lock-version = "1.1"
python-versions = ">=3.7,<3.11"
content-hash = "5a1bf7fe65d1fe23f7c34d44076cc157e3343699790a742492686d6198fb88eb"
[metadata.files]
certifi = [
{file = "certifi-2021.10.8-py2.py3-none-any.whl", hash = "sha256:d62a0163eb4c2344ac042ab2bdf75399a71a2d8c7d47eac2e2ee91b9d6339569"},
{file = "certifi-2021.10.8.tar.gz", hash = "sha256:78884e7c1d4b00ce3cea67b44566851c4343c120abd683433ce934a68ea58872"},
]
charset-normalizer = [
{file = "charset-normalizer-2.0.7.tar.gz", hash = "sha256:e019de665e2bcf9c2b64e2e5aa025fa991da8720daa3c1138cadd2fd1856aed0"},
{file = "charset_normalizer-2.0.7-py3-none-any.whl", hash = "sha256:f7af805c321bfa1ce6714c51f254e0d5bb5e5834039bc17db7ebe3a4cec9492b"},
]
colorama = [
{file = "colorama-0.4.4-py2.py3-none-any.whl", hash = "sha256:9f47eda37229f68eee03b24b9748937c7dc3868f906e8ba69fbcbdd3bc5dc3e2"},
{file = "colorama-0.4.4.tar.gz", hash = "sha256:5941b2b48a20143d2267e95b1c2a7603ce057ee39fd88e7329b0c292aa16869b"},
]
idna = [
{file = "idna-3.3-py3-none-any.whl", hash = "sha256:84d9dd047ffa80596e0f246e2eab0b391788b0503584e8945f2368256d2735ff"},
{file = "idna-3.3.tar.gz", hash = "sha256:9d643ff0a55b762d5cdb124b8eaa99c66322e2157b69160bc32796e824360e6d"},
]
numpy = [
{file = "numpy-1.21.4-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:8890b3360f345e8360133bc078d2dacc2843b6ee6059b568781b15b97acbe39f"},
{file = "numpy-1.21.4-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:69077388c5a4b997442b843dbdc3a85b420fb693ec8e33020bb24d647c164fa5"},
{file = "numpy-1.21.4-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:e89717274b41ebd568cd7943fc9418eeb49b1785b66031bc8a7f6300463c5898"},
{file = "numpy-1.21.4-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:0b78ecfa070460104934e2caf51694ccd00f37d5e5dbe76f021b1b0b0d221823"},
{file = "numpy-1.21.4-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:615d4e328af7204c13ae3d4df7615a13ff60a49cb0d9106fde07f541207883ca"},
{file = "numpy-1.21.4-cp310-cp310-win_amd64.whl", hash = "sha256:1403b4e2181fc72664737d848b60e65150f272fe5a1c1cbc16145ed43884065a"},
{file = "numpy-1.21.4-cp37-cp37m-macosx_10_9_x86_64.whl", hash = "sha256:74b85a17528ca60cf98381a5e779fc0264b4a88b46025e6bcbe9621f46bb3e63"},
{file = "numpy-1.21.4-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl", hash = "sha256:92aafa03da8658609f59f18722b88f0a73a249101169e28415b4fa148caf7e41"},
{file = "numpy-1.21.4-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl", hash = "sha256:5d95668e727c75b3f5088ec7700e260f90ec83f488e4c0aaccb941148b2cd377"},
{file = "numpy-1.21.4-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:f5162ec777ba7138906c9c274353ece5603646c6965570d82905546579573f73"},
{file = "numpy-1.21.4-cp37-cp37m-win32.whl", hash = "sha256:81225e58ef5fce7f1d80399575576fc5febec79a8a2742e8ef86d7b03beef49f"},
{file = "numpy-1.21.4-cp37-cp37m-win_amd64.whl", hash = "sha256:32fe5b12061f6446adcbb32cf4060a14741f9c21e15aaee59a207b6ce6423469"},
{file = "numpy-1.21.4-cp38-cp38-macosx_10_9_universal2.whl", hash = "sha256:c449eb870616a7b62e097982c622d2577b3dbc800aaf8689254ec6e0197cbf1e"},
{file = "numpy-1.21.4-cp38-cp38-macosx_10_9_x86_64.whl", hash = "sha256:2e4ed57f45f0aa38beca2a03b6532e70e548faf2debbeb3291cfc9b315d9be8f"},
{file = "numpy-1.21.4-cp38-cp38-macosx_11_0_arm64.whl", hash = "sha256:1247ef28387b7bb7f21caf2dbe4767f4f4175df44d30604d42ad9bd701ebb31f"},
{file = "numpy-1.21.4-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl", hash = "sha256:34f3456f530ae8b44231c63082c8899fe9c983fd9b108c997c4b1c8c2d435333"},
{file = "numpy-1.21.4-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.whl", hash = "sha256:4c9c23158b87ed0e70d9a50c67e5c0b3f75bcf2581a8e34668d4e9d7474d76c6"},
{file = "numpy-1.21.4-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:e4799be6a2d7d3c33699a6f77201836ac975b2e1b98c2a07f66a38f499cb50ce"},
{file = "numpy-1.21.4-cp38-cp38-win32.whl", hash = "sha256:bc988afcea53e6156546e5b2885b7efab089570783d9d82caf1cfd323b0bb3dd"},
{file = "numpy-1.21.4-cp38-cp38-win_amd64.whl", hash = "sha256:170b2a0805c6891ca78c1d96ee72e4c3ed1ae0a992c75444b6ab20ff038ba2cd"},
{file = "numpy-1.21.4-cp39-cp39-macosx_10_9_universal2.whl", hash = "sha256:fde96af889262e85aa033f8ee1d3241e32bf36228318a61f1ace579df4e8170d"},
{file = "numpy-1.21.4-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:c885bfc07f77e8fee3dc879152ba993732601f1f11de248d4f357f0ffea6a6d4"},
{file = "numpy-1.21.4-cp39-cp39-macosx_11_0_arm64.whl", hash = "sha256:9e6f5f50d1eff2f2f752b3089a118aee1ea0da63d56c44f3865681009b0af162"},
{file = "numpy-1.21.4-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl", hash = "sha256:ad010846cdffe7ec27e3f933397f8a8d6c801a48634f419e3d075db27acf5880"},
{file = "numpy-1.21.4-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl", hash = "sha256:c74c699b122918a6c4611285cc2cad4a3aafdb135c22a16ec483340ef97d573c"},
{file = "numpy-1.21.4-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:9864424631775b0c052f3bd98bc2712d131b3e2cd95d1c0c68b91709170890b0"},
{file = "numpy-1.21.4-cp39-cp39-win32.whl", hash = "sha256:b1e2312f5b8843a3e4e8224b2b48fe16119617b8fc0a54df8f50098721b5bed2"},
{file = "numpy-1.21.4-cp39-cp39-win_amd64.whl", hash = "sha256:e3c3e990274444031482a31280bf48674441e0a5b55ddb168f3a6db3e0c38ec8"},
{file = "numpy-1.21.4-pp37-pypy37_pp73-manylinux_2_12_x86_64.manylinux2010_x86_64.whl", hash = "sha256:a3deb31bc84f2b42584b8c4001c85d1934dbfb4030827110bc36bfd11509b7bf"},
{file = "numpy-1.21.4.zip", hash = "sha256:e6c76a87633aa3fa16614b61ccedfae45b91df2767cf097aa9c933932a7ed1e0"},
]
requests = [
{file = "requests-2.26.0-py2.py3-none-any.whl", hash = "sha256:6c1246513ecd5ecd4528a0906f910e8f0f9c6b8ec72030dc9fd154dc1a6efd24"},
{file = "requests-2.26.0.tar.gz", hash = "sha256:b8aa58f8cf793ffd8782d3d8cb19e66ef36f7aba4353eec859e74678b01b07a7"},
]
scipy = [
{file = "scipy-1.7.3-1-cp310-cp310-macosx_12_0_arm64.whl", hash = "sha256:c9e04d7e9b03a8a6ac2045f7c5ef741be86727d8f49c45db45f244bdd2bcff17"},
{file = "scipy-1.7.3-1-cp38-cp38-macosx_12_0_arm64.whl", hash = "sha256:b0e0aeb061a1d7dcd2ed59ea57ee56c9b23dd60100825f98238c06ee5cc4467e"},
{file = "scipy-1.7.3-1-cp39-cp39-macosx_12_0_arm64.whl", hash = "sha256:b78a35c5c74d336f42f44106174b9851c783184a85a3fe3e68857259b37b9ffb"},
{file = "scipy-1.7.3-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:173308efba2270dcd61cd45a30dfded6ec0085b4b6eb33b5eb11ab443005e088"},
{file = "scipy-1.7.3-cp310-cp310-macosx_12_0_arm64.whl", hash = "sha256:21b66200cf44b1c3e86495e3a436fc7a26608f92b8d43d344457c54f1c024cbc"},
{file = "scipy-1.7.3-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:ceebc3c4f6a109777c0053dfa0282fddb8893eddfb0d598574acfb734a926168"},
{file = "scipy-1.7.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:f7eaea089345a35130bc9a39b89ec1ff69c208efa97b3f8b25ea5d4c41d88094"},
{file = "scipy-1.7.3-cp310-cp310-win_amd64.whl", hash = "sha256:304dfaa7146cffdb75fbf6bb7c190fd7688795389ad060b970269c8576d038e9"},
{file = "scipy-1.7.3-cp37-cp37m-macosx_10_9_x86_64.whl", hash = "sha256:033ce76ed4e9f62923e1f8124f7e2b0800db533828c853b402c7eec6e9465d80"},
{file = "scipy-1.7.3-cp37-cp37m-manylinux_2_12_i686.manylinux2010_i686.whl", hash = "sha256:4d242d13206ca4302d83d8a6388c9dfce49fc48fdd3c20efad89ba12f785bf9e"},
{file = "scipy-1.7.3-cp37-cp37m-manylinux_2_12_x86_64.manylinux2010_x86_64.whl", hash = "sha256:8499d9dd1459dc0d0fe68db0832c3d5fc1361ae8e13d05e6849b358dc3f2c279"},
{file = "scipy-1.7.3-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:ca36e7d9430f7481fc7d11e015ae16fbd5575615a8e9060538104778be84addf"},
{file = "scipy-1.7.3-cp37-cp37m-win32.whl", hash = "sha256:e2c036492e673aad1b7b0d0ccdc0cb30a968353d2c4bf92ac8e73509e1bf212c"},
{file = "scipy-1.7.3-cp37-cp37m-win_amd64.whl", hash = "sha256:866ada14a95b083dd727a845a764cf95dd13ba3dc69a16b99038001b05439709"},
{file = "scipy-1.7.3-cp38-cp38-macosx_10_9_x86_64.whl", hash = "sha256:65bd52bf55f9a1071398557394203d881384d27b9c2cad7df9a027170aeaef93"},
{file = "scipy-1.7.3-cp38-cp38-macosx_12_0_arm64.whl", hash = "sha256:f99d206db1f1ae735a8192ab93bd6028f3a42f6fa08467d37a14eb96c9dd34a3"},
{file = "scipy-1.7.3-cp38-cp38-manylinux_2_12_i686.manylinux2010_i686.whl", hash = "sha256:5f2cfc359379c56b3a41b17ebd024109b2049f878badc1e454f31418c3a18436"},
{file = "scipy-1.7.3-cp38-cp38-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:eb7ae2c4dbdb3c9247e07acc532f91077ae6dbc40ad5bd5dca0bb5a176ee9bda"},
{file = "scipy-1.7.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:95c2d250074cfa76715d58830579c64dff7354484b284c2b8b87e5a38321672c"},
{file = "scipy-1.7.3-cp38-cp38-win32.whl", hash = "sha256:87069cf875f0262a6e3187ab0f419f5b4280d3dcf4811ef9613c605f6e4dca95"},
{file = "scipy-1.7.3-cp38-cp38-win_amd64.whl", hash = "sha256:7edd9a311299a61e9919ea4192dd477395b50c014cdc1a1ac572d7c27e2207fa"},
{file = "scipy-1.7.3-cp39-cp39-macosx_10_9_x86_64.whl", hash = "sha256:eef93a446114ac0193a7b714ce67659db80caf940f3232bad63f4c7a81bc18df"},
{file = "scipy-1.7.3-cp39-cp39-macosx_12_0_arm64.whl", hash = "sha256:eb326658f9b73c07081300daba90a8746543b5ea177184daed26528273157294"},
{file = "scipy-1.7.3-cp39-cp39-manylinux_2_12_i686.manylinux2010_i686.whl", hash = "sha256:93378f3d14fff07572392ce6a6a2ceb3a1f237733bd6dcb9eb6a2b29b0d19085"},
{file = "scipy-1.7.3-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:edad1cf5b2ce1912c4d8ddad20e11d333165552aba262c882e28c78bbc09dbf6"},
{file = "scipy-1.7.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:5d1cc2c19afe3b5a546ede7e6a44ce1ff52e443d12b231823268019f608b9b12"},
{file = "scipy-1.7.3-cp39-cp39-win32.whl", hash = "sha256:2c56b820d304dffcadbbb6cbfbc2e2c79ee46ea291db17e288e73cd3c64fefa9"},
{file = "scipy-1.7.3-cp39-cp39-win_amd64.whl", hash = "sha256:3f78181a153fa21c018d346f595edd648344751d7f03ab94b398be2ad083ed3e"},
{file = "scipy-1.7.3.tar.gz", hash = "sha256:ab5875facfdef77e0a47d5fd39ea178b58e60e454a4c85aa1e52fcb80db7babf"},
]
ssgetpy = []
tqdm = [
{file = "tqdm-4.62.3-py2.py3-none-any.whl", hash = "sha256:8dd278a422499cd6b727e6ae4061c40b48fce8b76d1ccbf5d34fca9b7f925b0c"},
{file = "tqdm-4.62.3.tar.gz", hash = "sha256:d359de7217506c9851b7869f3708d8ee53ed70a1b8edbba4dbcb47442592920d"},
]
urllib3 = [
{file = "urllib3-1.26.7-py2.py3-none-any.whl", hash = "sha256:c4fdf4019605b6e5423637e01bc9fe4daef873709a7973e195ceba0a62bbc844"},
{file = "urllib3-1.26.7.tar.gz", hash = "sha256:4987c65554f7a2dbf30c18fd48778ef124af6fab771a377103da0585e2336ece"},
]

16
pyproject.toml
View File

@@ -1,16 +0,0 @@
[tool.poetry]
name = "ss-downloader"
version = "0.1.0"
description = ""
authors = ["Carl Pearson <cwpears@sandia.gov>"]
[tool.poetry.dependencies]
python = ">=3.7,<3.11"
ssgetpy = {git = "https://github.com/cwpearson/ssgetpy.git", rev = "be00d2a"}
scipy = "^1.7.3"
[tool.poetry.dev-dependencies]
[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"

2
requirements.txt Normal file
View File

@@ -0,0 +1,2 @@
ssgetpy
scipy