docker-doxygen

cd /path/to/source
docker run --rm -v $(pwd):/data -it cwpearson/doxygen doxygen

Makefiles

Consider adding the following to a makefile to use this to build docs

docker_docs:
    docker run -it --rm -v `pwd`:/data cwpearson/doxygen  doxygen doxygen.config
    docker run -it --rm -v `readlink -f docs/latex`:/data cwpearson/doxygen make